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Table 1 shRNA targeting sequences

From: Cellular toxicity following application of adeno-associated viral vector-mediated RNA interference in the nervous system

Gene

Sequence

Npn-1 a

cttcaacccacatttcgat

Npn-1 b

gatagtaagaggtgtcatca

Npn-2

ggagtatctccaggtggac

Npn-2

gcccagccaggtgaagaat

Npn-2 a

agattgtcctcaacttcaa

Npn-2

tggccggattgctaatgaa

Npn-2

catggagttccaataccaa

Npn-2

caaggagtatctccaggtgga

Npn-2 b

caagcccagccaggtgaagaat

Fusa5

agatcctctgttctctctc

  1. Targeting sequences in rat Neuropilin 1 (Npn-1) and rat Neuropilin 2 (Npn-2) genes used to generate short interfering RNAs (shRNA). (a,b) Sequences that displayed efficient shRNA mediated knockdown of Npn-1 and Npn-2 in F11 cells when delivered by lentiviral vectors. The Arabidopsis Thaliana FUSA 5 gene (Fusa5) targeting sequence was used to create a non functional control shRNA construct.