From: Kalrn promoter usage and isoform expression respond to chronic cocaine exposure
Gene Name | Oligo Name | Sequence | Tm (°C) | Length (nt) |
---|---|---|---|---|
GAPDH | mrGapdh-top | TTGTCAGCAATGCATCCTGCACCACC | 61 | 119 |
 | mrGapdh-rev2bot | CTGAGTGGCAGTGATGGCATGGAC | 61 |  |
3'-terminal exons | ||||
   Kalirin7-specific | KalEx33-for | GATACCATATCCATTGCCTCCAGGACC | 61 | 127 |
 | Kal7unique-rev | CCAGGCTGCGCGCTAAACGTAAG | 62 |  |
   Kalirin8-specific | KalEx38-for | CTGACGTGCCTACTGCTGCAGAC | 61 | 130 |
 | Kal8unique-rev | CTGGTTGAGGTCCTGGGAGCCAC | 62 |  |
   Kalirin9-specific | KalEx51-for | GCCCCTCGCCAAAGCCACAGC | 62 | 125 |
 | Kal9unique-rev | CCAGTGAGTCCCGTGGTGGGC | 62 |  |
   Kalirin12-specific | KalEx62-for | CAGCAGCCACGTGCCTGCAGC | 62 | 140 |
 | KalEx62-rev | TCTTGACATTGGGAATGGGCCGCAC | 61 |  |
Promoter-specific | ||||
   Kalirin A promoter | KalPromA-for | CAGGGCAGCCATAAATGGTTTTATCTG | 58 | 121 |
 | KalEx3-rev | CCTCGCTTGTCACGCCCCC | 60 |  |
   Kalirin B promoter | KalPromB-for | GTGGACGCCTTTTTCCGGACAG | 59 | 116 |
 | KalEx3-rev | CCTCGCTTGTCACGCCCCC | 60 |  |
   Kalirin C promoter | KalPromC-for | CTTGCTTCGGCTTCTGGATCGAG | 59 | 117 |
 | KalEx3-rev | CCTCGCTTGTCACGCCCCC | 60 |  |
   Kalirin D promoter | KalPromD-for | CTTTGTTTCTTCCTCACTGCAGCGG | 59 | 120 |
 | KalEx3-rev | CCTCGCTTGTCACGCCCCC | 60 |  |
   ΔKalirin promoter | ΔKalProm-for | ATCCCAGGGTGAGCAGTGAGAAGG | 61 | 144 |
 | mKal-Ex11-rev | ATTCCCCAGTCTGAGCCAGCTGC | 61 |  |
   Full-length Kalirins | mKal-Ex10-for | GCCTTTCTCAGCAAACACACTGGGG | 61 | 157 |
 | mKal-Ex11-rev | ATTCCCCAGTCTGAGCCAGCTGC | 61 |  |