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Modelling spatially realistic local field potentials in spiking neural networks using the VERTEX simulation tool

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Local field potentials (LFPs), measured using extracellular electrodes, provide information about local neuronal population activity. The development of multi-electrode arrays (MEAs) that measure LFPs simultaneously at different network locations has led to a renewed interest in the LFP as a measure of neuronal network activity [1]. While there is a well-understood relationship between neuronal current-sources and LFPs, the complexities of current generation in spatially organised neuronal networks mean that relating LFP measurements to the underlying network dynamics is non-trivial [1]. Forward modelling studies have shown that the use of multicompartment models incorporating dendritic structure is crucial for simulating spatially realistic LFPs [2]. However, most forward models of neural network dynamics use simplified single-compartment neurons, because they are easier to parameterise and much less computationally expensive to simulate.

Here, we describe two contributions to the effort to understand LFP generation in neuronal networks. First, we investigated reduced compartmental models to assess their suitability for producing realistic spatial LFP characteristics. We show that the chosen reduction method [3] creates compartmental models that preserve essential spatial LFP features, while being computationally cheap enough for large network simulations. Second, we developed the Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX): a tool for simulating LFPs in spatially organised, spiking neural networks. We implemented VERTEX in Matlab (Mathworks Inc., Natick, MA, USA) as it is widely used throughout the neuroscience community, and we provide a simple interface based on parameter specification so that VERTEX can be used even by non-programmers. Code vectorisation and parallelisation methods allow VERTEX to simulate networks containing hundreds of thousands of reduced compartmental neurons in reasonable time. We demonstrate how VERTEX can be used to simulate LFPs at hundreds of locations in a large-scale, spatially organised cortical network model, and how these results can be used in conjunction with experimental data, by comparing simulation results with MEA recordings of persistent gamma oscillations made in macaque neocortical tissue in vitro.

References

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    Einevoll GT, Kayser C, Logothetis NK, Panzeri S: Modelling and analysis of local field potentials for studying the function of cortical circuits. Nat Rev Neurosci. 2013, 14 (11): 770-7785. 10.1038/nrn3599.

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    Petterson KH, Lindén H, Dale AM, Einevoll GT: Extracellular spikes and current-source density. Handbook of Neural Activity Measurement. 2012, NewYork: Cambridge University Press, 92-135. Brette R, Destexhe A

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    Bush PC, Sejnowski TJ: Reduced compartmental models of neocortical pyramidal cells. J Neurosci Meth. 1993, 46 (2): 159-166. 10.1016/0165-0270(93)90151-G.

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Acknowledgements

The authors are grateful for the support of the BBSRC, EPSRC, MRC, Wolfson Foundation and Wellcome Trust.

Author information

Correspondence to Richard J Tomsett.

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This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Tomsett, R.J., Ainsworth, M., Thiele, A. et al. Modelling spatially realistic local field potentials in spiking neural networks using the VERTEX simulation tool. BMC Neurosci 15, P130 (2014) doi:10.1186/1471-2202-15-S1-P130

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Keywords

  • Neuronal Network
  • Compartmental Model
  • Local Field Potential
  • Gamma Oscillation
  • EXtracellular Potential