Table 3 Genes with HDAC3 binding sites in cerebellar granule neurons
From: The Bdnf and Npas4 genes are targets of HDAC3-mediated transcriptional repression
Gene symbol | Gene details | Distance to nearest TSS | Binding in HK/LK |
|---|---|---|---|
Nr3c2 | Nuclear receptor subfamily 3, group C, member 2 | − 2023 | HK |
Npy2r | Neuropeptide Y receptor Y2 | − 1951 | HK |
Opa3 | Optic atrophy 3 | − 1853 | HK |
Neurod2 | Neuronal differentiation 2 | − 1583 | HK |
Hes1 | hes family bHLH transcription factor 1 | − 1363 | LK |
Npas4 | Neuronal PAS domain protein 4 | − 1063 | HK |
Bcl2l10 | BCL2-like 10 (apoptosis facilitator) | − 1051 | LK |
Bdnf | Brain-derived neurotrophic factor | − 1015 | LK |
Hrk | Harakiri, BCL2 interacting protein | − 917 | LK |
Fadd | Fas (TNFRSF6)-associated via death domain | − 900 | HK |
Nptxr | Neuronal pentraxin receptor | − 890 | HK |
C1qa | Complement component 1, q subcomponent, A chain | − 874 | HK |
Nmnat2 | Nicotinamide nucleotide adenylyltransferase 2 | − 868 | HK |
Bid | BH3 interacting domain death agonist | − 824 | LK |
Rhebl1 | Ras homolog enriched in brain like 1 | − 687 | LK |
Grip1 | Glutamate receptor interacting protein 1 | − 375 | LK |
Klf10 | Kruppel-like factor 10 | − 362 | HK |
Diablo | Diablo, IAP-binding mitochondrial protein | − 284 | LK |
Grm4 | Glutamate receptor, metabotropic 4 | − 259 | HK |
Npffr1 | Neuropeptide FF receptor 1 | − 202 | LK |
Tgfb1 | Transforming growth factor, beta 1 | − 112 | LK |
Syngr1 | Synaptogyrin 1 | − 87 | LK |
Plxnd1 | Plexin D1 | − 45 | HK |
Gabarap | GABA(A) receptor-associated protein | − 31 | HK |
App | Amyloid beta (A4) precursor protein | 52 | LK |
Snapin | SNAP-associated protein | 58 | HK |